Applications
General Infromation
Application status and examples
The CI status page shows the operation of the applications installed on ICM computers. There are also examples for download.
The collection of applications available on ICM computers changes frequently - especially in terms of installed versions. The following list includes the most important of them, but you should bear in mind that it may not take into account recent changes.
Can we install the X application? In most cases, yes - provided its license allows it. This is preferred the software itself falls under one of the free license, including those that are incompatible with the GNU GPL, but meet the definition of free software.
Użytkownicy ICM mają ponadto dostęp do aplikacji objętych licencjami krajowymi. W przypadku programów, które nie należą do tej kategorii, a nie są objęte wolną licencją, obowiązek pozyskania licencji i dopełnienia jej warunków spoczywa na Użytkowniku.
ICM users also have access to the applications under National License. For applications that do not fall under this category, and are not covered by an open license, an obligation to obtain a license and compliance with its conditions rests with the User.
Requests to install the application should be reported here.
Can I install software by myself?
Users can compile and install their own software.
The above licensing considerations apply.
Sample instruction is available [here](../Tutorials/HPC-intro/instalacja_oprogramowania.md).
Available software
Available software
Software version on Okeanos and Topola cluster.
Generated on: pon, 10 sty 2022, 13:07:07 CET
abinit/8.10.1
abinit/8.10.3(default)
abinit/8.10.3-patch
abinit/9.4.1
ambertools/20
bedtools2/2.29.2
castep/19.11
castep/20.11
cp2k/6.1.0(default)
cp2k/8.2.0
espresso/6.1
espresso/6.1.0(default)
espresso/6.2.1
espresso/6.4
espresso/6.5
espresso/6.6
espresso/6.7
fluent/17.0
fluent/17.1
fluent/18.0
fluent/19.1
fluent/21.1
gromacs/2018.4-plumed
gromacs/2019.0
gromacs/2020(default)
julia/1.3.0
lammps/29Sep21
lammps/31Mar17
lammps/5Jun19(default)
ls-dyna/10.1.0(default)
ls-dyna/11.0.0
ls-dyna/11.1
ls-dyna/8.0.0
module_permission_check
namd/2.11
namd/2.13(default)
ncl/6.6.2
nwchem/6.6
nwchem/6.8
openfoam/1218(default)
openmx/3.9.2
r/3.4.2
r/4.0.3
rsem/1.3.3
samtools/1.10
siesta/4.1
siesta/4.1-b4
socketauth/1.3.1-7.0.1.1_1.7__gfdd1da0.ari(default)
tau/2.30
tensorflow/1.13.0
vasp/5.2.12
vasp/5.4.4(default)
vasp/5.4.4_optics
vasp/5.4.4-spinorb
vasp/5.4.4_vtst
vasp/5.4.4_wannier_patch
vasp/6.1.1
vasp/6.2.1
vasp/6.2.1-gnu
vtstscripts/93
wannier90/3.1.0-gnu
wannier90/3.1.0-intel
xz/5.2.4
yambo/5.0.3
Generated on: pon, 10 sty 2022, 13:04:48 CET
abinit/8.0.6
abinit/8.10.3(default)
abinit/8.4.4
abinit/9.2.2
abinit/9.4.1
ambertools/20
bedtools/2.30.0
cp2k/6.1.0(default)
cpmd/v4
crystal/17
cufflinks/2.2.1
dalton/2015
dalton/2020
elk/4.3.6(default)
elk/6.8.4
espresso/5.0.2
espresso/5.0.3
espresso/6.1.0(default)
espresso/6.3.0
espresso/6.5
espresso/6.7
fluent/15.0
fluent/18.0
fluent/18.2(default)
fluent/19.0
fluent/20.1
fluent/21.1
gaussian/g09.B.01
gaussian/g09.D.01
gaussian/g09.E.01
gaussian/g16.A.01(default)
gromacs/2020
gromacs/5.1.1(default)
hadoop/cdh-4.3.0
hadoop/cdh-tt-4.3.0
hisat2/2.2.1
julia/1.1.1
lammps/14Dec21
lammps/16Mar18_mpi3_rigid
lammps/5Jun19(default)
mathematica/10.3
mathematica/11.0
matlab/R2016b(default)
meep/1.14
meep/1.3
module_permission_check
namd/2.13(default)
namd/2.14
ncbi_blast/2.11.0
nwchem/6.8(default)
octave/5.2.0
openfoam/2.1.1
openfoam/5.0
orca/4.2.1
orca/5.0.1
picard-tools/2.24.0
plumed/2.2.1
r/3.5.1
r/4.0.3
rosetta/2020.08.61146
rsem/1.3.3
samtools/1.11
scratch1D/2.0
siesta/4.0b
siesta/4.1-b4
singular/4.2.1
soapnuke/2.1.5
star/2.7.7a
stringtie/2.1.5
subread/2.0.1
trimmomatic/0.39
vasp/5.4.1
vasp/5.4.4(default)
vasp/5.4.4_wannier
vasp/5.4.4_wannier_patch
vasp/6.1.1
wannier90/2.0.1
wannier90/3.0.0(default)
wannier90/3.1.0
#!/bin/bash
# this scripts generates a list of available applications based on modules.
FILE="list_of_apps.txt"
rm -f $FILE
echo "Generated on: $(date)" >> $FILE
for app in $(ls /apps/modulefiles/apps/); do
echo -e "================ APP: $app ==============\n"
echo "" >> $FILE
if [ ! "$app" == "r" ]
then
module avail -t 2>&1 | grep -i $app | grep -v "@" | sed 's/apps\///' | sort | uniq | tee -a $FILE
else
module avail -t 2>&1 | grep -i apps/r/ | grep -v "@" | sed 's/apps\///' | sort | uniq | tee -a $FILE
fi
done